Linux無管理員許可權,使用conda安裝jupyter的R語言環境

kingwzun發表於2024-04-12

解決了2天,坑點滿滿,哭死😭

解決R語言的依賴

安裝Seurat

直接install.packages('Seurat')安裝會報錯

Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘Cairo’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘igraph’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘SeuratObject’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘leiden’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘mutoss’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘qqconf’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘hdf5r’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘ggrastr’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘Seurat’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘Rfast’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘Rfast2’ had non-zero exit status”
Warning message in install.packages("Seurat", dependencies = T, source = T):
“installation of package ‘metap’ had non-zero exit status”
Updating HTML index of packages in '.Library'

Making 'packages.html' ...
 done

簡而言之意思就是需要提前安裝Cairo等東西

解決辦法:
開啟自己的conda環境,輸入如下命令

# 安裝Cairo
conda install -c r r-cairo

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